Journal of Ethnopharmacology and Toxicology | Volume 3 Issue 1 | Pages: 65-79 | Doi : 10.37446/jet/rsa/3.1.2025.65-79
Research Article
OPEN ACCESS | Published on : 30-Jun-2025

In-silico pharmacokinetics study of phenolic compounds identified from Ageratum conyzoides


  • Paul Chijioke Ozioko
  • Biology Unit, Faculty of Science, Air Force Institute of Technology, Kaduna, Nigeria.

  • Aminu Ibrahim
  • Department of Biochemistry, Faculty of Basic Medical Sciences, Bayero University, Kano, Nigeria.

  • Samira A Abdullahi
  • Department of Life Science, Faculty of Computing and Applied Sciences, Baze University, Abuja, Nigeria.

Abstract

The extent of drug action is in direct relationship with the amount of the drug in aqueous medium in contact with the substrate molecules. The factors affecting this concentration in a biological system can be classified into the pharmacokinetics (PK) phase and the pharmacodynamics phase of drug action. Thus, this research focused on the in silico PKs analyses of phenolics (furocoumarinic acid, liquiritin, isorhamnetin and syringin) identified from ethylacetate fraction of methanol leaf extract of A. conyzoides. Determination of the pharmacokinetics and physicochemical properties of the above phenolics were achieved using SwissADME, ADMETlab 2.0 and SuperCYPsPred webservers synergistically. The phenolics with best in-silico pharmacokinetics parameters was further studied experimentally using in-vitro α-amylase and α-glucosidase inhibition assays. The findings indicated that four phenolics are soluble in water, and all the ligands have consensus logP values less than 5 according to Lipinski’s Rule of 5, with isorhamnetin being the best (LogP 1.6). Also, most of the phenolics are non-inhibitors of the main CYP450 isozymes, but 1A2 and 3A4 were inhibited by isorhamnetin. Similarly, they are mostly non-substrates of the isozymes, but 2C9, 2C19, and 2D6 were metabolized by isorhamnetin. Inhibition assays using isorhamnetin-containing sample indicated that the inhibitory effects were more on α-glucosidase (IC50 of 18.11 and 15.97µg/ml for acarbose and isorhamnetin, respectively) than on α-amylase. This study has demonstrated that these phenolics from ethylacetate fraction of methanol leaf extract of A. conyzoides have relatively good pharmacokinetics within the acceptable limit of drug-like molecules.

Keywords

pharmacokinetics, in-silico, Ageratum conyzoides, phenolics, ethylacetate

References

  • Adel, M.N., Asma, E., Moayed, B.M., Zhai, E.L., et al. (2023). “Rigidity and flexibility of pyrazole, s-triazole, and v-triazole derivative of chloroquine as potential therapeutic against COVID-19”. Journal of Medical and Chemical Science, 6(9), 2056-2084. https://doi.org/10.26655/JMCHEMSCI.2023.9.14

    Alam, S., & Khan, F. (2018). Virtual screening, docking, ADMET and system pharmacology studies on garcinia caged xanthone derivatives for anticancer activity. Scientific reports, 8(1), 5524.

    Antunes-Ricardo, M., Gutiérrez-Uribe, J. A., Martínez-Vitela, C., & Serna-Saldívar, S. O. (2015). Topical Anti‐Inflammatory Effects of Isorhamnetin Glycosides Isolated from Opuntia ficus-indica. BioMed research international, 2015(1), 847320.

    Ashande, M. C., Mpiana, P. T., & Ngbolua, K. N. (2015). Ethnobotany and pharmacognosy of Ageratum conyzoides L.(Compositae). Journal of Advancement in Medical and Life Sciences, 2(4), 1-6.

    Banerjee, P., Dunkel, M., Kemmler, E., & Preissner, R. (2020). SuperCYPsPred—a web server for the prediction of cytochrome activity. Nucleic Acids Research, 48(W1), W580- W585. https://doi.org/10.1093/nar/gkaa166

    Bidstrup, T. B., Bjørnsdottir, I., Sidelmann, U. G., Thomsen, M. S., & Hansen, K. T. (2003). CYP2C8 and CYP3A4 are the principal enzymes involved in the human in vitro biotransformation of the insulin secretagogue repaglinide. British journal of clinical pharmacology, 56(3), 305-314.

    Chen, F., Li, D. Y., Zhang, B., Sun, J. Y., Sun, F., Ji, X., ... & Xu, J. (2018). Alterations of drug-metabolizing enzymes and transporters under diabetic conditions: what is the potential clinical significance?. Drug Metabolism Reviews, 50(3), 369-397. https://doi.org/10.1080/03602532.2018.1497645

    Chen, S. Z., Pan, P. P., Shen, L. B., Xu, S. S., Dai, D. P., Geng, P. W., ... & Hu, G. X. (2014). Drug-drug interaction of losartan and glimepiride metabolism by recombinant microsome CYP2C9* 1, 2C9* 3, 2C9* 13, and 2C9* 16 in vitro. Int J Clin Pharmacol Ther, 52(9), 732-738.

    Daina, A., Michielin, O., & Zoete, V. (2017). SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules. Scientific reports, 7(1), 42717.

    Di, L. (2014). The role of drug metabolizing enzymes in clearance. Expert Opinion in Drug Metabolism and. Toxicology, 10, 379-393.

    Diao, X., Carlier, J., Zhu, M., Pang, S., Kronstrand, R., Scheidweiler, K. B., & Huestis, M. A. (2017). In vitro and in vivo human metabolism of a new synthetic cannabinoid NM-2201 (CBL-2201). Forensic toxicology, 35(1), 20-32.

    Do, M. T., Kim, H. G., Tran, T. T. P., Khanal, T., Choi, J. H., Chung, Y. C., ... & Jeong, H. G. (2014). Metformin suppresses CYP1A1 and CYP1B1 expression in breast cancer cells by down-regulating aryl hydrocarbon receptor expression. Toxicology and applied pharmacology, 280(1), 138-148.

    Dong, G. Z., Lee, J. H., Ki, S. H., Yang, J. H., Cho, I. J., Kang, S. H., ... & Kim, Y. W. (2014). AMPK activation by isorhamnetin protects hepatocytes against oxidative stress and mitochondrial dysfunction. European Journal of Pharmacology, 740, 634-640. https://doi.org/10.1016/j.ejphar.2014.06.017

    Ghani, U. (2015). Re-exploring promising 𝛼-glucosidase inhibitors for potential development into oral anti-diabetic drugs: finding needle in the haystack. Europian Journal of Medicinal Chemistry, 103, 133-162.

    Hirota, T., Eguchi, S., & Ieiri, I. (2013). Impact of genetic polymorphisms in CYP2C9 and CYP2C19 on the pharmacokinetics of clinically used drugs. Drug metabolism and pharmacokinetics, 28(1), 28-37.

    Huang, S. M., Strong, J. M., Zhang, L., Reynolds, K. S., Nallani, S., Temple, R., ... & Lesko, L. J. (2008). New era in drug interaction evaluation: US Food and Drug Administration update on CYP enzymes, transporters, and the guidance process. The Journal of clinical pharmacology, 48(6), 662-670. https://doi.org/10.1177/0091270007312153

    Kato, H. (2019). Computational prediction of cytochrome P450 inhibition and induction. Drug Metabolism and Pharmacokinetic, 35(1):30-44. https://doi.org/10.1016/j.dmpk.2019.11.006

    Kazmi, S. R., Jun, R., Yu, M. S., Jung, C., & Na, D. (2019). In silico approaches and tools for the prediction of drug metabolism and fate: A review. Computers in Biology and Medicine, 106, 54-64.
    https://doi.org/10.1016/j.compbiomed.2019.01.008

    Kim, S., Thiessen, P. A., Bolton, E. E., Chen, J., Fu, G., Gindulyte, A., ... & Bryant, S. H. (2016). PubChem substance and compound databases. Nucleic acids research, 44(D1), D1202-D1213.

    Kim, Y. C., Lee, A. K., Lee, J. H., Lee, I., Lee, D. C., Kim, S. H., ... & Lee, M. G. (2005). Pharmacokinetics of theophylline in diabetes mellitus rats: induction of CYP1A2 and CYP2E1 on 1, 3-dimethyluric acid formation. European journal of pharmaceutical sciences, 26(1), 114-123.

    Kirchmair, J., Göller, A. H., Lang, D., Kunze, J., Testa, B., Wilson, I. D., ... & Schneider, G. (2015). Predicting drug metabolism: experiment and/or computation?. Nature reviews Drug discovery, 14(6), 387-404.
    https://doi.org/10.1038/nrd4581

    Kobori, T., Harada, S., Nakamoto, K., & Tokuyama, S. (2013). Functional alterations of intestinal P-glycoprotein under diabetic conditions. Biological and Pharmaceutical Bulletin, 36(9), 1381-1390.

    Lee, D. Y., Chung, H. J., Choi, Y. H., Lee, U., Kim, S. H., Lee, I., & Lee, M. G. (2009). Pharmacokinetics of ipriflavone and its two metabolites, M1 and M5, after the intravenous and oral administration of ipriflavone to rat model of diabetes mellitus induced by streptozotocin. European Journal of Pharmaceutical Sciences, 38(5), 465-471.

    Lee, Y. S., Lee, S., Lee, H. S., Kim, B. K., Ohuchi, K., & Shin, K. H. (2005). Inhibitory effects of isorhamnetin-3-O-β-D-glucoside from Salicornia herbacea on rat lens aldose reductase and sorbitol accumulation in streptozotocin-induced diabetic rat tissues. Biological and Pharmaceutical Bulletin, 28(5), 916-918. https://doi.org/10.1248/bpb.28.916

    Li, Z.H., Deng, Y., Cai, H.L., Guo, Z.H., Hou, Z.Y., Wu, G., et al. (2016). Pharmacokinetic properties and bioequivalence of spironolactone tablets in fasting and fed healthy Chinese male subjects. International Journal of Clinical Pharmacology and Therapeutics, 54(6), 455–461.

    Liang, Y., Li, S., & Chen, L. (2015). The physiological role of drug transporters. Protein & cell, 6(5), 334-350.

    Lin, J. H., & Yamazaki, M. (2003). Role of P-glycoprotein in pharmacokinetics: clinical implications. Clinical pharmacokinetics, 42(1), 59-98.

    Lipinski, C. A., Lombardo, F., Dominy, B. W., & Feeney, P. J. (2001). Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Advanced drug delivery reviews, 46(1-3), 3-26.

    Liqing, H., Huan, H., Zhantu, L., Dan, L., Dong, Y., & Ming, H. (2016). Protective effects of isorhamnetin on cardiomyocytes against anoxia/reoxygenation-induced injury is mediated by SIRT1. Journal of Cardiovascular Pharmacology, 67(6), 526–537.

    Liu, L., & Liu, X. D. (2014). Alterations in function and expression of ABC transporters at blood-brain barrier under diabetes and the clinical significances. Frontiers in pharmacology, 5, 273.

    Martignoni, M., Groothuis, G. M., & de Kanter, R. (2006). Species differences between mouse, rat, dog, monkey and human CYP-mediated drug metabolism, inhibition and induction. Expert opinion on drug metabolism & toxicology, 2(6), 875-894.

    Matzke, G. R., Frye, R. F., Early, J. J., Straka, R. J., & Carson, S. W. (2000). Evaluation of the influence of diabetes mellitus on antipyrine metabolism and CYP1A2 and CYP2D6 activity. Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy, 20(2), 182-190.

    Ottaviani, G., Gosling, D. J., Patissier, C., Rodde, S., Zhou, L., & Faller, F. (2010). What is modulating solubility in simulated intestinal fluids? European Journal of Pharmaceutical Science, 41 (3-4), 452-457. https://doi.org/10.1016/j.ejps.2010.07.012

    Ozioko, P. C., Ibrahim, A., Muhammad, Y. Y., & Bashir, M. (2024). Fractionation and identification of phenolic compounds from ethylacetate fraction of ageratum conyzoides methanolic leaf extract. International Journal of Emerging Multidisciplinarie: Biomedical and Clinical Research, 2 (1), 1-21.

    Ozioko, P.C., Muhammed, Y.Y., & Ibrahim, A. (2022). Ageratum conyzoides methanol leaf extract: phytochemicals with antidiabetic potential via antioxidant activity. Asian Journal of Biochemistry, 17(1), 15-24. https://doi.org/10.3923/ajb.2022.15.24

    Pajouhesh, H., & Lenz, G. R. (2005). Medicinal chemical properties of successful central nervous system drugs. NeuroRx, 2(4), 541-553.  https://doi.org/10.1602/neurorx.2.4.541

    Palleria, C., Di Paolo, A., Giofrè, C., Caglioti, C., Leuzzi, G., Siniscalchi, A., ... & Gallelli, L. (2013). Pharmacokinetic drug-drug interaction and their implication in clinical management. Journal of research in medical sciences: the official journal of Isfahan University of Medical Sciences, 18(7), 601-610.

    Pistia-Brueggeman, G., & Hollingsworth, R. I. (2001). A preparation and screening strategy for glycosidase inhibitors. Tetrahedron, 57(42), 8773-8778.

    Rahman, M. A. (2012). Analgesic and anti-inflammatory effect of whole Ageratum conyzoides and Emilia sonchifolia alcoholic extracts in animal models. African Journal of Pharmacy and Pharmacology, 6(20), 1469-1476.

    Ritchie, T. J., Macdonald, S. J., Peace, S., Pickett, S. D., & Luscombe, C. N. (2013). Increasing small molecule drug developability in sub-optimal chemical space. MedChemComm, 4(4), 673-680.

    Shaaban, S., Abdou, A., Alhamzani, A. G., Abou-Krisha, M. M., Al-Qudah, M. A., Alaasar, M., ... & Yousef, T. A. (2023). Synthesis and in silico investigation of organoselenium-clubbed schiff bases as potential Mpro inhibitors for the SARS-CoV-2 replication. Life, 13(4), 912. https://doi.org/10.3390/life13040912

    Shadid, M., Liu, Y., Veizaj, E., Huang, J., Johnson, J., & Kamel, A. (2018). Evaluation of rat brain subcellular fractions for the prediction of in vivo drug metabolism in brain. Drug Metabolism and Pharmacokinetics, 33(1), S79. https://doi.org/10.1016/J.DMPK.2017.11.259

    Szakács, G., Váradi, A., Özvegy-Laczka, C., & Sarkadi, B. (2008). The role of ABC transporters in drug absorption, distribution, metabolism, excretion and toxicity (ADME–Tox). Drug discovery today, 13(9-10), 379-393.

    Talevi, A. (2016). Computational approaches for innovative antiepileptic drug discovery. Expert Opinion on Drug Discovery, 11(10), 1001-1016.

    Tamil, I. G., Dineshkumar, B., Nandhakumar, M., Senthilkumar, M., & Mitra, A. (2010). In vitro study on α-amylase inhibitory activity of an Indian medicinal plant, Phyllanthus amarus. Indian journal of pharmacology, 42(5), 280-282.

    Xiong, G., Wu, Z., Yi, J., Fu, L., Yang, Z., Hsieh, C., ... & Cao, D. (2021). ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties. Nucleic acids research, 49(W1), W5-W14.

    Yadav, N., Ganie, S. A., Singh, B., Chhillar, A. K., & Yadav, S. S. (2019). Phytochemical constituents and ethnopharmacological properties of Ageratum conyzoides L. Phytotherapy Research, 33(9), 2163-2178.

    Zhao, J. J., Song, J. Q., Pan, S. Y., & Wang, K. (2016). Treatment with isorhamnetin protects the brain against ischemic injury in mice. Neurochemical Research, 41(8), 1939-1948.

    Zhu, T., Cao, S., Su, P. C., Patel, R., Shah, D., Chokshi, H. B., ... & Hevener, K. E. (2013). Hit identification and optimization in virtual screening: Practical recommendations based on a critical literature analysis: Miniperspective. Journal of medicinal chemistry, 56(17), 6560-6572.